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TobyBaril / EarlGrey

Earl Grey: A fully automated TE curation and annotation pipeline
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conda found conflicts #41

Closed OliveiraDS-hub closed 1 year ago

OliveiraDS-hub commented 1 year ago

Dear @TobyBaril

I'm trying to install EarGrey, which will be super useful for my thesis, but there is an error with conda during ./configure step.

Checking RepeatMasker and RepeatModeler configuration
Success! RepeatMasker is installed and in PATH
Success! RepeatModeler is installed and in PATH
Collecting package metadata (repodata.json): done
Solving environment: \ 
Found conflicts! Looking for incompatible packages.
This can take several minutes.  Press CTRL-C to abort.

I've installed RepeatMasker and RepeatModeler following "with sudo" instructions. My OS is Ubuntu 18.08, with miniconda3 v23.3.1.

I tried a few times and it's stucked at this step.

My condarc:

auto_activate_base: false
report_errors: false
channels:
  - defaults
channel_priority: strict

I have a reasonable internet connection, a lot of free space, and my conda is working properly for other environments. Do you have any idea how to solve this problem?

Thank you in advance!

OliveiraDS-hub commented 1 year ago

Well, it seems like there is a problem in my conda. I've followed exactly the same steps in another machine and it's working perfectly.

I'm closing the issue, but still I'd like to know if you have any thoughts about a possible solution.

Best regards