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TobyBaril / EarlGrey

Earl Grey: A fully automated TE curation and annotation pipeline
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Runtime and Restarting #93

Closed rpyron closed 7 months ago

rpyron commented 7 months ago

Is is normal for the step invoking "mergeRepeats.R" to run for several days without any output? My genome is quite large (16GB) and has a very high repeat content - a salamander.

If this job times out on my cluster, will re-running it pick up at the same point it left off? Are any modifications needed to restart a run without having to redo the earlier steps? Thanks!

rpyron commented 7 months ago

I see this was addressed previously!