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ToepferLab / CalTrack

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No excel files created #1

Open collinkb opened 2 years ago

collinkb commented 2 years ago

I've been trying to run CalTrack on single cell videos of primary cardiomyocytes loaded with Cal520. I have .czi files, but only got anything to work by manually converting them to tif before running the main script. I then make it through the main script, and a trace is extracted. I'm getting hung up on the data analysis portion, and excel files are never created. I receive the following error message near the end: Done! Results saved in folder "calcium_analysis" in :/Users/kerrie/Documents/MATLAB/CalTrack-master/Images/calcium_analysis

noisy signal detected and excluded. Unrecognized field name "name".

Error in DataAnalysis (line 472) names = {single_traces.name}';

Error in main (line 228) DataAnalysis

Can anyone help with this?

ToepferLab commented 2 years ago

Hi,

Could you please contact us by email at this email: @.***

Chris

On 10 Nov 2022, at 13:35, collinkb @.***> wrote:



I've bee tying to run CalTrack on single cell videos of primary cardiomyocytes loaded with Cal520. I have .czi files, but only got anything to work by maually converting them to tif before running the main script. I then make it through the main script, and a trace is extracted. I'm getting hung up on the data analysis portion, and excel files are never created. I receive the following error message near the end: Done! Results saved in folder "calcium_analysis" in :/Users/kerrie/Documents/MATLAB/CalTrack-master/Images/calcium_analysis

noisy signal detected and excluded. Unrecognized field name "name".

Error in DataAnalysis (line 472) names = {single_traces.name}';

Error in main (line 228) DataAnalysis

Can anyone help with this?

— Reply to this email directly, view it on GitHubhttps://github.com/ToepferLab/CalTrack/issues/1, or unsubscribehttps://github.com/notifications/unsubscribe-auth/APUE2CVVWQAZQ26AKRHQRP3WHU53TANCNFSM6AAAAAAR43KPWQ. You are receiving this because you are subscribed to this thread.Message ID: @.***>

collinkb commented 2 years ago

Hi Chris, Is replying to your email directly working? It appears as all asterisks on github. Best, Kerrie

On Thu, Nov 10, 2022 at 10:41 AM ToepferLab @.***> wrote:

Hi,

Could you please contact us by email at this email: @.***

Chris

On 10 Nov 2022, at 13:35, collinkb @.***> wrote:



I've bee tying to run CalTrack on single cell videos of primary cardiomyocytes loaded with Cal520. I have .czi files, but only got anything to work by maually converting them to tif before running the main script. I then make it through the main script, and a trace is extracted. I'm getting hung up on the data analysis portion, and excel files are never created. I receive the following error message near the end: Done! Results saved in folder "calcium_analysis" in :/Users/kerrie/Documents/MATLAB/CalTrack-master/Images/calcium_analysis

noisy signal detected and excluded. Unrecognized field name "name".

Error in DataAnalysis (line 472) names = {single_traces.name}';

Error in main (line 228) DataAnalysis

Can anyone help with this?

— Reply to this email directly, view it on GitHub< https://github.com/ToepferLab/CalTrack/issues/1>, or unsubscribe< https://github.com/notifications/unsubscribe-auth/APUE2CVVWQAZQ26AKRHQRP3WHU53TANCNFSM6AAAAAAR43KPWQ>.

You are receiving this because you are subscribed to this thread.Message ID: @.***>

— Reply to this email directly, view it on GitHub https://github.com/ToepferLab/CalTrack/issues/1#issuecomment-1310744322, or unsubscribe https://github.com/notifications/unsubscribe-auth/ATSB3F2MW7HAN6EFB65JLVTWHU6WZANCNFSM6AAAAAAR43KPWQ . You are receiving this because you authored the thread.Message ID: @.***>

ToepferLab commented 2 years ago

It seems to be working. Would you please email from your own email to continue this discussion, as it would be easier to mesh you up with the people to help troubleshoot.

On 10 Nov 2022, at 18:49, collinkb @.***> wrote:

Hi Chris, Is replying to your email directly working? It appears as all asterisks on github. Best, Kerrie

On Thu, Nov 10, 2022 at 10:41 AM ToepferLab @.***> wrote:

Hi,

Could you please contact us by email at this email: @.***

Chris

On 10 Nov 2022, at 13:35, collinkb @.***> wrote:



I've bee tying to run CalTrack on single cell videos of primary cardiomyocytes loaded with Cal520. I have .czi files, but only got anything to work by maually converting them to tif before running the main script. I then make it through the main script, and a trace is extracted. I'm getting hung up on the data analysis portion, and excel files are never created. I receive the following error message near the end: Done! Results saved in folder "calcium_analysis" in :/Users/kerrie/Documents/MATLAB/CalTrack-master/Images/calcium_analysis

noisy signal detected and excluded. Unrecognized field name "name".

Error in DataAnalysis (line 472) names = {single_traces.name}';

Error in main (line 228) DataAnalysis

Can anyone help with this?

— Reply to this email directly, view it on GitHub< https://github.com/ToepferLab/CalTrack/issues/1 https://github.com/ToepferLab/CalTrack/issues/1>, or unsubscribe< https://github.com/notifications/unsubscribe-auth/APUE2CVVWQAZQ26AKRHQRP3WHU53TANCNFSM6AAAAAAR43KPWQ https://github.com/notifications/unsubscribe-auth/APUE2CVVWQAZQ26AKRHQRP3WHU53TANCNFSM6AAAAAAR43KPWQ>.

You are receiving this because you are subscribed to this thread.Message ID: @.***>

— Reply to this email directly, view it on GitHub <https://github.com/ToepferLab/CalTrack/issues/1#issuecomment-1310744322 https://github.com/ToepferLab/CalTrack/issues/1#issuecomment-1310744322>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/ATSB3F2MW7HAN6EFB65JLVTWHU6WZANCNFSM6AAAAAAR43KPWQ https://github.com/notifications/unsubscribe-auth/ATSB3F2MW7HAN6EFB65JLVTWHU6WZANCNFSM6AAAAAAR43KPWQ> . You are receiving this because you authored the thread.Message ID: @.***>

— Reply to this email directly, view it on GitHub https://github.com/ToepferLab/CalTrack/issues/1#issuecomment-1310751877, or unsubscribe https://github.com/notifications/unsubscribe-auth/APUE2CW3QWX5HHF7FGELV73WHU7URANCNFSM6AAAAAAR43KPWQ. You are receiving this because you commented.

collinkb commented 1 year ago

I need an email address please. So far it appears as @.***

ToepferLab commented 1 year ago

Sorry this last message got lost. Please google my name or go to for the email address: https://www.rdm.ox.ac.uk/people/christopher-toepfer