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TomMaullin / BLMM

This repository contains all code for the BLMM toolbox.
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generalizing submission engine to non-fMRIB clusters #58

Closed ericfeczko closed 2 years ago

ericfeczko commented 2 years ago

Right now, the beauty of the design cannot be enabled for non-fMRIB clusters. Fortunately, the scaled design enables some straightforward (though time consuming) revisions to ensure its ready.

Currently the submission enginge for batch_cluster.py relies on a specific configuration for the HPC system. I will revise the code in a separate fork to enable the system to generalize to SLURM clusters and without specific configurations. The code revisions will be scaled to be backwards compatible and work with prior builds.

ericfeczko commented 2 years ago

I'll do this in my own fork and initiate a pull request after testing

vinferrer commented 2 years ago

We are actually using dask for this propouse in PR #61. Once review and merged only a jobqueue.yalm will be needed

ericfeczko commented 2 years ago

Thanks! I can offer to test that on my cluster and report back :)

ericfeczko commented 2 years ago

closed due to PR #61