Is it possible to plot fusion gene with MatchAnnot?

TomSkelly / MatchAnnot

Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.

GNU General Public License v3.0

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Is it possible to plot fusion gene with MatchAnnot? #8

Open 52teth opened 8 years ago

52teth commented 8 years ago

Dear TomSkelly I have predicted several fusion genes by cDNA_primer's fusion_finder.py program, Now I have got the fusion.gff and fusion.rep.fa files. Now I am wondering if it is possible to plot the fusion gene with MatchAnno view.

Thanks a lot for any reply(^o^)/~

thelingxichen commented 6 years ago

Hi @52teth ,

It might be a late reply. I found the current version is able to anno fusion genes genereted by fusion_finder.py.

Just do the alignment on xxx_fusion.rep.fq, and then run matchAnnot.