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ToniWestbrook
/
paladin
Protein Alignment and Detection Interface
MIT License
60
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7
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align issue (-T and -k options)
#48
fallinwind
opened
1 year ago
0
Has the PALADIN project been abandoned?
#47
hermidalc
closed
2 years ago
2
docker image downloads and indexes references to installation directory
#46
colin-heberling
closed
3 years ago
10
can't find download locations of uniprot indexes
#45
colin-heberling
closed
3 years ago
3
paladin prepare work around - pre-indexed UniRef90 available?
#44
rmondav
closed
3 years ago
4
Paladin align error: Reporting can only be used on prepared indices.
#43
fnew
closed
4 years ago
2
flag for not checking read ids in PE mode?
#42
avilella
opened
4 years ago
1
Bug where last sequence in fasta/fastq is ignored
#41
mohammedmsk
closed
2 years ago
0
command "paladin prepare -r2" throwing error related to memory ?
#40
jaidevjoshi83
opened
5 years ago
7
Multithread in db creation
#39
gundizalv
closed
5 years ago
1
Filtering by max quality
#38
gundizalv
closed
5 years ago
4
make returns error (OSX 10.12.6)
#37
tkkanno
closed
6 years ago
2
Columns ID to Cross Reference(EnsemblBacteria) are empty
#36
kdutrufen
closed
6 years ago
2
Error: [E::command_align] Reporting can only be used on prepared indices.
#35
alejandrodesantiago
closed
6 years ago
1
Problem retrieving data from Uniprot
#34
marcelosoria
closed
6 years ago
2
Piping fastq results in "-.pro"
#33
mw55309
closed
4 years ago
1
Add Dockerfile and wrapper script
#32
sminot
closed
7 years ago
0
Recommended RAM for Db creation
#31
blaizereal
closed
4 years ago
1
[bwt_pac2bwt] Failed to allocate memory
#30
ghost
closed
6 years ago
2
Support for non-standard genetic codes
#29
ToniWestbrook
closed
6 years ago
0
Align protein sequences
#28
abremges
closed
7 years ago
2
Release/1.1.0
#27
ToniWestbrook
closed
8 years ago
0
Output Directly to BAM
#26
ToniWestbrook
opened
9 years ago
0
Next steps
#25
wkthomas
closed
8 years ago
0
Using contigs rather than reads
#24
ameetpinto
closed
6 years ago
5
extra count in report header.
#23
macmanes
closed
8 years ago
4
Large Contiguous Blocks of Ambiguous IUPACs in Reference
#22
ToniWestbrook
closed
7 years ago
0
Release/1.0.0
#21
ToniWestbrook
closed
9 years ago
0
Release/0.2.0
#20
ToniWestbrook
closed
9 years ago
0
paladin align -o
#19
macmanes
closed
9 years ago
4
few reads mapping
#18
macmanes
closed
8 years ago
8
Not deleting reads PRO file
#17
ToniWestbrook
closed
9 years ago
1
Saving unmapped reads
#16
tarunaaggarwal
closed
9 years ago
2
seg fault when index is missing or mis-specified.
#15
macmanes
closed
9 years ago
1
process substitution?
#14
macmanes
opened
9 years ago
0
update
#13
macmanes
closed
9 years ago
0
increment version for bug fixes/minor enhancement
#12
macmanes
closed
9 years ago
0
PALADIN with PEAR-merged versus L and R cat
#11
macmanes
closed
7 years ago
13
alignment stats
#10
macmanes
closed
9 years ago
2
taxa in uniprot report
#9
macmanes
closed
9 years ago
5
Uniprot report
#8
macmanes
closed
9 years ago
2
align -u 2
#7
macmanes
closed
9 years ago
3
align help info
#6
macmanes
closed
9 years ago
2
index info
#5
macmanes
closed
9 years ago
1
paladin prep?
#4
macmanes
closed
9 years ago
0
paladin prep?
#3
macmanes
closed
8 years ago
6
make fails
#2
macmanes
closed
9 years ago
4
Add a Gitter chat badge to README.md
#1
gitter-badger
closed
9 years ago
0