Joint update: v1.6.2 and v1.6.3 - Githubissues

Topp-Roots-Lab / 3d-root-crown-analysis-pipeline

A pipeline to process 3-D volumes (.raw) of maize root crowns. Also known as XRCAP.

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Joint update: v1.6.2 and v1.6.3 #29

Closed tparkerd closed 3 years ago

tparkerd commented 3 years ago

v1.6.3 - 2021-01-19

Changed

Disabled log file structure generation upon installation

Fixed

Accidentally attempts to divide by zero during stat texture calculation (resolves #27)

v1.6.2 - 2020-12-11

Added

Threaded building blocks library as dependency
Commit short hash in version reported at runtime
Check and reduction of circular artifacts at stalk side and root-tip side of roots system during segmentation

Changed

Use system installation of skel
Cleaned up syntax to be clearer and consistent

Fixed

Changed expected input type of sampling for segmentation from string to integer
Changed filepath delimiter used during soil-removal-based segmentation

Removed

Skeleton from included binaries
Unused code in cli module
Condition for filter image (.png) files found in a thresholded images folder (see note 1)
Notes

Previously, it required that each image contain the name of its parent folder; otherwise, it would not be processed.