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Townsend-Lab-Yale / massprf-pipeline

pipeline for genome wide MASSPRF analysis
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Variant instantiation uses a ton of memory/cpu time #16

Closed stanleyjs closed 7 years ago

stanleyjs commented 7 years ago

This change occurred after changing the chromosome referencing to reassignment.

Investigate whether the assignment step can be removed, and chromosomes can be edited without changing their underlying reference (eg variant insertion in a chromosome does not affect all of the other strains)

stanleyjs commented 7 years ago

i think i fixed this by changing the chromosome instantiation in VariantGenome to be deepcopy