plot_hic's inner radius is wrong.

[ijunier]

Is the bug related to my part of the code?

[NelleV]

I'm not sure…

Here's some code to identify and reproduce the problem:

  from circhic import datasets
  from circhic._base import CircHiCFigure

  # Load the data, compute the cumulative raw counts.
  data = datasets.load_ecoli()
  counts = data["counts"]
  lengths = data["lengths"]

  ###############################################################################
  # A simple vertical colorbar
  circhicfig = CircHiCFigure(lengths)
  im, ax = circhicfig.plot_hic(counts, inner_radius=0.5)

  rax = circhicfig._create_subplot(outer_radius=0.5)
  rax.set_rgrids([])
  rax.set_thetagrids([])
  rax.spines["polar"].set_linewidth(2)
  rax.spines["polar"].set_color("r")

  rax = circhicfig._create_subplot(outer_radius=1)
  rax.set_rgrids([])
  rax.set_thetagrids([])
  rax.spines["polar"].set_linewidth(2)
  rax.spines["polar"].set_color("r")

The black lines from the HiC contact map border and the red lines are supposed to overlay. The results is as follows:

[NelleV]

The problem comes from the subplot. I'll check out exactly what's going on…

[NelleV]

I think the problem may come from Matplotlib :(

[ijunier]

Another one! ;)