Closed hetica closed 6 years ago
Hi, a complete refactoring of dekupl-run is going one. This is one of the feature that will be addressed. However in the current version you can define your own transcriptome using the transcript_fasta
parameter in the config file (see README).
Gencode annotation file is hard-coded. With the version number as parameter in config.json file, it would be easier to change for a newer version.