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Transipedia / dekupl-run

Identify differentially expressed k-mers between RNA-Seq datasets
MIT License
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Annotation file #38

Closed hetica closed 6 years ago

hetica commented 6 years ago

Gencode annotation file is hard-coded. With the version number as parameter in config.json file, it would be easier to change for a newer version.

jaudoux commented 6 years ago

Hi, a complete refactoring of dekupl-run is going one. This is one of the feature that will be addressed. However in the current version you can define your own transcriptome using the transcript_fasta parameter in the config file (see README).