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Transipedia / dekupl-run

Identify differentially expressed k-mers between RNA-Seq datasets
MIT License
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Limma-voom error #62

Open MarineAGLAVE opened 5 years ago

MarineAGLAVE commented 5 years ago

I have an error when I use limma-voom for genes, at the level of voom function: Error in get(as.character(FUN), mode = "function", envir = envir) : object 'ties' of mode 'function' was not found Calls: voom ... regularize.values -> as.vector -> tapply -> match.fun -> get Execution halted

I fixed that by the installation of limma-voom myself: if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager", repo="http://cran.us.r-project.org") ; BiocManager::install("limma")

Maybe it comes from the package version: Dekupl installation: limma_3.40.0 Dekupl installation + myself limma installation: limma_3.38.3

To investigate...