# VALIDATE sample names issue in Snakefile

Transipedia / dekupl-run

Identify differentially expressed k-mers between RNA-Seq datasets

MIT License

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# VALIDATE sample names issue in Snakefile #69

Open DenisTEMPE opened 4 years ago

DenisTEMPE commented 4 years ago

The "VALIDATE sample names" command line in the Snakefile allows letters, underscore and numbers from 1 to 9, thus excluding 0-containing file names : if not re.match(r"^[a-zA-Z][1-9a-zA-Z]*$", name): I replaced it by the following: if not re.match(r"^[a-zA-Z][0-9a-zA-Z]*$", name): And it now works fine.

DenisTEMPE commented 4 years ago

Sorry I didn't get the 1.3.4 release fixing this issue one year ag!... Merci Jérôme

jaudoux commented 4 years ago

@DenisTEMPE Great ! I forgot about that, I was going to fix it another time...

How did it happened that you did not had the latest version? Did U used Docker, Conda, Singluarity or a manual install ?

Do no hesitate to submit other issues if you have other bug or questions about DEkupl.

Best, J.

DenisTEMPE commented 3 years ago

Hi Jérôme, It seems that the Conda version of dekupl-run is still not up to date. Could the Conda release be updated to the latest version? Thanks in advance! Denis