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TranslatorSRI / NameResolution

A service for finding CURIEs from lexical strings.
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Missing brand name in name resolution service #26

Open micheldumontier opened 2 years ago

micheldumontier commented 2 years ago

Hi, querying the API, i don't get a suggestion for the label "Ongentys" , which is a brand/synonym for OPICAPONE https://pubchem.ncbi.nlm.nih.gov/compound/135565903

vemonet commented 2 years ago

Same for "Sertraline Tablets"

But "Sertraline" map to PUBCHEM.COMPOUND:68617

cbizon commented 2 years ago

Thanks for the report. Spot checking, I'd say we're currently pretty weak on brand names for drugs overall. The only one I found was lipitor. It doesn't seem that the sapbert that we're playing with does very well either (though it does handle the "sertraline tablets" query fine).

gaurav commented 1 year ago

RxNorm has a lot of brand names, so once we've added that to Babel (https://github.com/TranslatorSRI/Babel/issues/150) that will hopefully mostly solve this problem.

gaurav commented 1 year ago

@genomewide I remember you mentioning that you had a list of the top-selling drugs in the US for use in autocomplete checking -- I'd love to use that list to test this issue. Could you please send me that list or add it to this issue?

gaurav commented 11 months ago

The list of top-selling drugs @Genomewide mentioned is https://www.drugdiscoverytrends.com/50-of-2022s-best-selling-pharmaceuticals/. I'll add these to the Babel validator and report back on where we currently are with this.

gaurav commented 3 months ago

We support most of the top 50 best selling US drugs now. The missing ones (the scratched off ones work as of Sep 25):

Some of that might be because we're filtering for SmallMolecule, but it's most likely either because we don't have the correct synonyms.