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TranslatorSRI / NodeNormalization

Service that produces Translator compliant nodes given a curie
MIT License
9 stars 6 forks source link

RXCUI #127

Open cbizon opened 2 years ago

cbizon commented 2 years ago

We need to add RXCUI for drugs and add drug/active ingredient conflation

karafecho commented 2 years ago

Related issues here and here.

gaurav commented 1 year ago

Here is some example code for pulling out RxNorm information from the UMLS (specifically has_tradename and tradename_of relations in MRREL.RRF): https://github.com/RENCI-NER/sapbert/blob/44defea94b9b0c81199788714fd49f9c90c9b5e0/training_data/generate_pretraining_data.ipynb

karafecho commented 1 year ago

This seems promising. @gaurav : Are you taking ownership of this issue? If so, please assign yourself. If not, then perhaps you can suggest someone?

andrewsu commented 1 year ago

just adding a +1 to this issue -- this was a minor stumbling block recently in creating a benchmark based on CPIC data in https://github.com/TranslatorSRI/Benchmarks/pull/11

gaurav commented 1 year ago

Also in Babel as https://github.com/TranslatorSRI/Babel/issues/150 and https://github.com/TranslatorSRI/Babel/issues/144 -- we hope to have this implemented as soon as possible, and definitely in time for the September Relay.

karafecho commented 1 year ago

Also see this.