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TranslatorSRI / NodeNormalization

Service that produces Translator compliant nodes given a curie
MIT License
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Request for Normalization of REACTOME Identifiers #198

Open beasleyjonm opened 1 year ago

beasleyjonm commented 1 year ago

We are currently working on curating select information from the REACTOME knowledge base and realized that one of the obstacles for ingestion of this sources is that many of the REACTOME concept identifiers do not normalize. Some of the REACT prefix CURIES for Pathways, Events, Reactions, etc. already do normalize, but other important concepts, including concepts for 'GenomeEncodedEntity' and 'EntityWithAccessionedSequence'. I've collected the list of REACTOME IDs, node labels, and node properties for all of the relevant REACTOME concepts that we would like to normalize. They are in this Google Drive link: https://docs.google.com/spreadsheets/d/1k4_wgpYke5kGx0x7x2OJuw4NvH7KJlIs/edit?usp=sharing&ouid=108501146906911893011&rtpof=true&sd=true

Please let me know if there is any other information that could be useful or if I could help in any way.

gaurav commented 1 year ago

There are workarounds for this, so it isn't super urgent, but the sooner we get it in the sooner we can save effort for other teams.