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TranslatorSRI / NodeNormalization

Service that produces Translator compliant nodes given a curie
MIT License
9 stars 6 forks source link

initial implementation chem conflation #211

Closed cbizon closed 8 months ago

cbizon commented 11 months ago

Adds in a drug/chemical conflation

cbizon commented 11 months ago

I have a Babel branch that creates the necessary conflation file. Im just testing it a bit more before PR

cbizon commented 11 months ago

I'm going to make a couple changes - converting to draft. I think that we want to set the parameters so that default behavior is not changed at this point, and then we will update them to be more coherent after Sept.

cbizon commented 11 months ago

So what I did was to add a new parameter called drug_chemical_conflation, with a default of False. This way, nobody needs to change their calls right now, and they will get the same expected behavior. Once this makes it up to prod & is in use, we will revisit, changing the name of the original conflation parameter to gene_protein_conflation and possibly setting the default for the new conflation to true.