Open amykglen opened 1 month ago
we noticed that the SRI node normalizer appears to miss merging CHEMBL.COMPOUND:CHEMBL1201522 with the MESH:D013668 clique, though as far as we can tell those concepts are equivalent.
CHEMBL.COMPOUND:CHEMBL1201522
MESH:D013668
https://nodenormalization-sri.renci.org/get_normalized_nodes?curie=MESH:D013668
{ "MESH:D013668":{ "id":{ "identifier":"MESH:D013668", "label":"Technetium Tc 99m Aggregated Albumin" }, "equivalent_identifiers":[ { "identifier":"MESH:D013668", "label":"Technetium Tc 99m Aggregated Albumin" }, { "identifier":"UMLS:C0039415", "label":"Technetium Tc 99m Aggregated Albumin" }, { "identifier":"DRUGBANK:DB09447" } ], "type":[ "biolink:ChemicalEntity", "biolink:NamedThing", "biolink:PhysicalEssence", "biolink:ChemicalOrDrugOrTreatment", "biolink:ChemicalEntityOrGeneOrGeneProduct", "biolink:ChemicalEntityOrProteinOrPolypeptide", "biolink:PhysicalEssenceOrOccurrent" ] } }
https://nodenormalization-sri.renci.org/get_normalized_nodes?curie=CHEMBL.COMPOUND:CHEMBL1201522
{ "CHEMBL.COMPOUND:CHEMBL1201522":{ "id":{ "identifier":"CHEMBL.COMPOUND:CHEMBL1201522", "label":"TECHNETIUM TC 99M ALBUMIN AGGREGATED" }, "equivalent_identifiers":[ { "identifier":"CHEMBL.COMPOUND:CHEMBL1201522", "label":"TECHNETIUM TC 99M ALBUMIN AGGREGATED" } ], "type":[ "biolink:ChemicalEntity", "biolink:NamedThing", "biolink:PhysicalEssence", "biolink:ChemicalOrDrugOrTreatment", "biolink:ChemicalEntityOrGeneOrGeneProduct", "biolink:ChemicalEntityOrProteinOrPolypeptide", "biolink:PhysicalEssenceOrOccurrent" ] } }
just thought we would report this for future improvements!
I suppose it's also worth noting that using drug_chemical_conflate=true doesn't resolve this one :)
drug_chemical_conflate=true
we noticed that the SRI node normalizer appears to miss merging
CHEMBL.COMPOUND:CHEMBL1201522
with theMESH:D013668
clique, though as far as we can tell those concepts are equivalent.https://nodenormalization-sri.renci.org/get_normalized_nodes?curie=MESH:D013668
https://nodenormalization-sri.renci.org/get_normalized_nodes?curie=CHEMBL.COMPOUND:CHEMBL1201522
just thought we would report this for future improvements!