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TranslatorSRI / reference-kg

Reference knowledge graph for translator II
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Add biolink categories to monarch.owl #1

Closed kshefchek closed 4 years ago

kshefchek commented 4 years ago

test out using https://github.com/monarch-initiative/dipper/blob/master/scripts/categories/Makefile#L89, although the ttl is slightly stale until https://github.com/biolink/biolinkml/issues/193 is fixed

kshefchek commented 4 years ago

@deepakunni3 what output format is best (obo json, ntriples, tsv?)

matentzn commented 4 years ago

We should coordinate this maybe with the monarch-ontology export.. This framework I build does basic biolink typing as well.

kshefchek commented 4 years ago

we will use https://archive.monarchinitiative.org/202009/rdf/blcategories/class-category.ttl