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TravisWheelerLab
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AvxWindowFmIndex
A fast, AVX2 and ARM Neon accelerated FM index library
BSD 3-Clause "New" or "Revised" License
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Fix remaining issues with queries longer than 255
#44
Sawwave
closed
3 weeks ago
1
Another 0-count from k-mer generated from sequence used in Index
#43
EricR86
closed
3 weeks ago
3
fix issue where kmer lengths above 255 were causing undefined behavior.
#42
Sawwave
closed
4 weeks ago
1
0 counts for k-mer generated from same sequence as used in FM-index
#41
EricR86
closed
4 weeks ago
4
update to gracefully handle ambiguity codes in the kmerTable suffix r…
#40
Sawwave
closed
5 months ago
0
Segfault from awFmParallelSearchCount from a specific kmer
#39
EricR86
closed
5 months ago
4
add function for resolving a single bwt position to global position
#38
Sawwave
closed
6 months ago
0
add functions for finding the previous letter while backtracing
#37
Sawwave
closed
6 months ago
0
Add compiler flags to cmake build
#36
Sawwave
closed
6 months ago
0
Submodule divsfusort is missing OpenMP symbols when statically built
#35
EricR86
closed
4 weeks ago
7
Submodule divsufsort is not compiled with position independent code (-fPIC), cannot be used as a static library to generate a shared object
#34
EricR86
closed
4 weeks ago
2
Fix arm neon support
#33
Sawwave
closed
6 months ago
0
change backwardSearch signature to clarify that it takes a letter Idx
#32
Sawwave
closed
7 months ago
0
Fix cmake static files
#31
Sawwave
closed
7 months ago
2
copies the headers and static libs to the build dir when 'make static'
#30
Sawwave
closed
7 months ago
1
include FastaVector header installation fix
#29
Sawwave
closed
7 months ago
1
Legacy Makefile "Makefile_legacy" does not generate all necessary static libraries with the "static" target
#28
EricR86
closed
7 months ago
1
Cannot statically link to libawfmindex_static.a
#27
EricR86
closed
7 months ago
2
Example code in README uses a "struct" tag for AwFmReturnCode when type is an enum
#26
EricR86
closed
7 months ago
1
Installing header files omits "FastaVectorMetadataVector.h" and "FastaVectorString.h"
#25
EricR86
closed
7 months ago
2
fix incorrect error codes & where header metadata was written to
#24
Sawwave
closed
7 months ago
0
Fix fasta headers
#23
Sawwave
closed
7 months ago
0
add getNumSequences function
#22
Sawwave
closed
9 months ago
0
fix restrict keyword for cpp-compliance
#21
Sawwave
closed
9 months ago
0
remove broken auto submodule init
#20
Sawwave
closed
9 months ago
0
update cmake to auto initialize git submodules
#19
Sawwave
closed
9 months ago
0
add OpenMP support to cmake build
#18
Sawwave
closed
9 months ago
0
Add Rna alphabet
#17
Sawwave
closed
10 months ago
0
Cpp compliance
#16
Sawwave
closed
10 months ago
0
Fixfunc documentation
#15
Sawwave
closed
10 months ago
0
add return codes to parallel locate/parallel count
#14
Sawwave
closed
7 months ago
0
update readme, including to show that CMake works for mac now
#13
Sawwave
closed
2 years ago
0
Fix popcount overflow bug
#12
Sawwave
closed
2 years ago
0
Fix on disk suffix array lookup
#11
Sawwave
closed
2 years ago
0
New formatting
#10
Sawwave
closed
2 years ago
0
Update cmake mac notice
#9
Sawwave
closed
2 years ago
0
Update cmake mac notice
#8
Sawwave
closed
2 years ago
0
Finish setting up API docs with Doxygen
#7
glesica
closed
10 months ago
0
Format the code and commit
#6
glesica
closed
2 years ago
0
Fix CI build for Mac using CMake
#5
glesica
closed
7 months ago
1
Update build to use CMake
#4
glesica
closed
2 years ago
0
Async Suffix Array Read
#3
Sawwave
closed
2 years ago
1
make numThreads optional
#2
Sawwave
closed
2 years ago
0
remove deprecated structs from AwFmIndex.h
#1
Sawwave
closed
2 years ago
0