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TravisWheelerLab / BATH

Better Alignments with Translated HMMER
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Segmentation fault #7

Closed qussai96 closed 6 months ago

qussai96 commented 6 months ago

Hello,

I have encountered an issue while attempting to run BATH with some protein files.

I used this command: bathsearch -M --cpu 64 --tblout perseable_hits.out --fstblout frameshift_locations.out --hmmout produced_hmms.bhmm -o output.out ~/proteins.faa ~/genome.fa

and I got this error: /var/spool/slurm/d/job71513/slurm_script: line 12: 1992990 Segmentation fault (core dumped) ~/BATH/BATH/src/bathsearch -M --cpu 64 --tblout perseable_hits.out --fstblout frameshift_locations.out --hmmout produced_hmms.bhmm -o output.out ~/proteins.faa ~/genome.fa However BATH works with no errors using a different protein file.

Could you provide insight into what might be causing this issue? I attached the genome and protein files for you review. Files.zip

Thank you, Qussai

GenevieveKrause commented 6 months ago

Hello, I was able to reproduce the error but am still working on a fix. I will let you know when we have one. Thank you for bringing this issue to our attention.

Best, Genevieve Krause

GenevieveKrause commented 6 months ago

The bug has been fixed. You will need to do a git pull and make.