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TravisWheelerLab / BATH

Better Alignments with Translated HMMER
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Segmentation fault error #8

Closed rachelcrivero closed 1 month ago

rachelcrivero commented 2 months ago

Hello,

Thank you for the tool and great tutorial! I have encountered a similar problem to Issue #7.

Error: /var/spool/slurmd/job10605461/slurm_script: line 14: 85694 Segmentation fault (core dumped) bathsearch -o bathsearch_out --tblout bathsearch.tbl protein.bhmm genome.fa

I would greatly appreciate any help to resolve this problem!

Best, Rachel

GenevieveKrause commented 2 months ago

Hello,

Thanks for bringing this to our attention. I have been able to replicate the error and am working on locating the source of the seg fault. I will let you know as soon as we have a fix.

Best, Genevieve

GenevieveKrause commented 2 months ago

Should be all fixed. You will have to do a 'git pull' and then 'make' to update your repository. The issue was with bathbuild so you will need to rebuild your bhmm file, but then it should work fine.