Mirage generates multiple sequence alignments of proteoforms by mapping sequences back to their coding regions on the genome and then compressing those mappings into alignments.
BSD 3-Clause "New" or "Revised" License
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Changed commandline flags for 'blat_off' and 'only_map' to have under… #63
…scores.
Also made 'blat_off' one of the advertised flags for users looking at help info.