Closed z4668640 closed 8 months ago
Thanks for your interest in this implementation of NINJA. This repository is an "almost complete" reimplementation of the Java implementation at this site. The software generally works, but there remain a couple of small bugs, and the project is on hold (and not under active development) while we await the time to wrap it up to completion. For now, your best bet is probably to use the Java version listed in the previous sentence.
I'll leave this issue open, since this is a feature we'd like to support when we wrap things up
Thanks for your interest in this implementation of NINJA. This repository is an "almost complete" reimplementation of the Java implementation at this site. The software generally works, but there remain a couple of small bugs, and the project is on hold (and not under active development) while we await the time to wrap it up to completion. For now, your best bet is probably to use the Java version listed in the previous sentence.
I'll leave this issue open, since this is a feature we'd like to support when we wrap things up
Thank you for your reply, but I'm afraid not. Since your software is a dependency on another software, I expect this to be difficult to migrate. https://github.com/Dfam-consortium/RepeatModeler
Ah, yes. For that dependency, the specific release (0.98-cluster_only) of NINJA is the right one.
Have you tried compiling under Rosetta (https://support.apple.com/en-us/HT211861)?
Ah, yes. For that dependency, the specific release (0.98-cluster_only) of NINJA is the right one.
Have you tried compiling under Rosetta (https://support.apple.com/en-us/HT211861)?
No, I'm not using an apple. I use a Linux system. I'll look into the problem myself first. Thank you.
Ah, yes. For that dependency, the specific release (0.98-cluster_only) of NINJA is the right one.
Have you tried compiling under Rosetta (https://support.apple.com/en-us/HT211861)?
I may have found a solution to this problem.
#include <xmmintrin.h> /* SSE */
#include <emmintrin.h> /* SSE2 */
#include <tmmintrin.h> /* SSE3 */
replace with
#include "sse2neon.h"
I refer to the Intel's official description: https://github.com/DLTcollab/sse2neon
I've opened a PR that makes the changes suggested by @z4668640 at https://github.com/TravisWheelerLab/NINJA/issues/44#issuecomment-1865781967
I've opened a PR that makes the changes suggested by @z4668640 at #44 (comment)
Thank you very much for your help. But I must warn you that my method is only one possibility. He hasn't been rigorously tested.
I have used this solution in several other projects and it worked well!
I also added a CI job that runs make check
on Linux ARM64!
As the title shows, I now need to run it on an ARM chip. How can I compile it successfully?