0.2.0 - Githubissues

TravisWheelerLab / nail

Nail is an Alignment Inference tooL

BSD 3-Clause "New" or "Revised" License

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0.2.0 #8

Closed jackroddy closed 4 months ago

jackroddy commented 4 months ago

This merges the changes for 0.2.0 into main.

BREAKING

the prep and align subcommands have been removed from the CLI
no longer support MSA (.sto) query files

Features

no longer depends on hmmbuild
added support for sequence to sequence search
gained a bit of sensitivity by running mmseqs search at two profile relative entropy targets
the null two (composition bias) score correction has been improved for sparse alignment
tabular results formatting improved