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TreesLab / CircMiMi

A package for constructing CLIP-seq data-supported circRNA-miRNA-mRNA interactions
MIT License
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Error occur during circmimi_tools interactions command #4

Open aman21392 opened 1 year ago

aman21392 commented 1 year ago

I used this command:- nohup circmimi_tools interactions -r /Drive1/interactome_circRNA_miRNA_mRNA/ -i /Drive1/interactome_circRNA_miRNA_mRNA/checking_circRNA/E6_coordinate.tsv -o circ_interactome -p 30 &

The error which I got is below:

Traceback (most recent call last): File "/home/aclab/.local/bin/circmimi_tools", line 8, in sys.exit(cli()) File "/home/aclab/.local/lib/python3.7/site-packages/click/core.py", line 1130, in call return self.main(args, kwargs) File "/home/aclab/.local/lib/python3.7/site-packages/click/core.py", line 1055, in main rv = self.invoke(ctx) File "/home/aclab/.local/lib/python3.7/site-packages/click/core.py", line 1657, in invoke return _process_result(sub_ctx.command.invoke(sub_ctx)) File "/home/aclab/.local/lib/python3.7/site-packages/click/core.py", line 1404, in invoke return ctx.invoke(self.callback, ctx.params) File "/home/aclab/.local/lib/python3.7/site-packages/click/core.py", line 760, in invoke return __callback(args, **kwargs) File "/home/aclab/.local/lib/python3.7/site-packages/circmimi/scripts/circmimi_tools.py", line 109, in predict_interactions circmimi_result.run(circ_file) File "/home/aclab/.local/lib/python3.7/site-packages/circmimi/circmimi.py", line 197, in run 'name' File "/home/aclab/.local/lib/python3.7/site-packages/pandas/core/frame.py", line 7641, in groupby dropna=dropna, File "/home/aclab/.local/lib/python3.7/site-packages/pandas/core/groupby/groupby.py", line 897, in init dropna=self.dropna, File "/home/aclab/.local/lib/python3.7/site-packages/pandas/core/groupby/grouper.py", line 852, in get_grouper obj._check_label_or_level_ambiguity(gpr, axis=axis) File "/home/aclab/.local/lib/python3.7/site-packages/pandas/core/generic.py", line 1733, in _check_label_or_level_ambiguity raise ValueError(msg) ValueError: 'name' is both an index level and a column label, which is ambiguous.

can you please solve this issues. Thanks in advance.

chiangtw commented 1 year ago

Hi,

Thanks for reporting! Could you provide the version of your installed pandas? It would be very helpful!

tw

aman21392 commented 1 year ago

Thanks for your reply.

When i use pip command : pip show pandas then it shows Name: pandas Version: 1.3.5 Summary: Powerful data structures for data analysis, time series, and statistics Home-page: https://pandas.pydata.org Author: The Pandas Development Team Author-email: pandas-dev@python.org License: BSD-3-Clause Location: /home/aclab/.local/lib/python3.7/site-packages Requires: numpy, python-dateutil, pytz Required-by: circmimi, statsmodels

For python 3.6.9 the pandas version is 1.1.5. Python 3.6.9 is the default setting.

Thanks in advance