We have developed a new pipeline, NCLscan, which is rather advantageous in the identification of both intragenic and intergenic "non-co-linear" (NCL) transcripts (fusion, trans-splicing, and circular RNA) from paired-end RNA-seq data.
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Novoalign V3 and earlier can be used by non-profit organisations without a license with some limitations on functionality.
/home/rstudio/miniconda2/envs/kn/bin/novoalign Error - You need a valid current license to use this product. You can purchase a license or request a trial license from http://www.novocraft.com/buy-now/ Novoalign V3 and earlier can be used by non-profit organisations without a license with some limitations on functionality.