Open kopardev opened 1 year ago
Hi,
It may be caused by the mp_blat.py
, I guess.
mp_blat.py
is just a wrapper for applying multiple blat
processes, not a real parallelized version of blat
,
so the maximum memory usage would be equal to *4GB mp_blat_process
**.
("4GB" is for human genome, and the mp_blat_process
is a parameter in the NCLscan.config
, which is for tuning the number of proceses for mp_blat.py
)
tw
Running NCLscan on our HPC runs into memory issues. The dashboard plots look like this:
Any idea what is happening and how to get around this issue? Host is hg38 + a few viruses (well annotated).