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TrigosTeam / SPIAT

https://trigosteam.github.io/SPIAT/
Artistic License 2.0
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Multiple images #42

Open LukasHats opened 1 month ago

LukasHats commented 1 month ago

@fuerzhou Thanks for putting in so much work on spatial data analysis!

I am trying to process my spatial proteomics dataset, which consists of over 150 processed IMC images. Therefore my anndata object consists of cells from more than 1 image. Other tools like scimap allow to input a image_ID key in order to analyze the data image per image. Is this also possible in SPIAT? Also for reading in the data as shown here I could not find the option to specify an image key.

Thanks in advance!

fuerzhou commented 1 month ago

Hi @LukasHats Thank you for your interest in the tool. Unfortunately we currently don't have the function to specify image key to process objects with multiple images. You might consider doing some processing of the data to use SPIAT for your analysis.