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TrinhLab
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ctherm-gem
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Bump certifi from 2018.11.29 to 2022.12.7 in /analysis/memote
#74
dependabot[bot]
opened
1 year ago
0
Bump lxml from 4.3.1 to 4.9.1 in /analysis/memote
#73
dependabot[bot]
opened
2 years ago
0
Bump arrow from 0.13.1 to 0.15.1 in /analysis/memote
#72
dependabot[bot]
opened
2 years ago
0
Bump numpy from 1.16.0 to 1.22.0
#71
dependabot[bot]
opened
2 years ago
0
Bump numpy from 1.16.2 to 1.22.0 in /analysis/memote
#70
dependabot[bot]
opened
2 years ago
0
Bump cookiecutter from 1.6.0 to 2.1.1 in /analysis/memote
#69
dependabot[bot]
opened
2 years ago
0
Bump pyjwt from 1.7.1 to 2.4.0 in /analysis/memote
#68
dependabot[bot]
opened
2 years ago
0
Bump ipython from 7.3.0 to 7.16.3
#67
dependabot[bot]
opened
2 years ago
0
Bump lxml from 4.3.1 to 4.6.5 in /analysis/memote
#66
dependabot[bot]
closed
2 years ago
1
Bump babel from 2.6.0 to 2.9.1 in /analysis/memote
#65
dependabot[bot]
opened
2 years ago
0
Bump urllib3 from 1.24.1 to 1.26.5 in /analysis/memote
#64
dependabot[bot]
opened
3 years ago
0
Bump py from 1.8.0 to 1.10.0 in /analysis/memote
#63
dependabot[bot]
opened
3 years ago
0
Bump lxml from 4.3.1 to 4.6.3 in /analysis/memote
#62
dependabot[bot]
closed
2 years ago
1
Bump pygments from 2.3.1 to 2.7.4 in /analysis/memote
#61
dependabot[bot]
opened
3 years ago
0
Bump pygments from 2.3.1 to 2.7.4
#60
dependabot[bot]
opened
3 years ago
0
Bump pyyaml from 3.13 to 5.4 in /analysis/memote
#59
dependabot[bot]
opened
3 years ago
0
Bump jinja2 from 2.10 to 2.11.3 in /analysis/memote
#58
dependabot[bot]
opened
3 years ago
0
Bump lxml from 4.3.1 to 4.6.2 in /analysis/memote
#57
dependabot[bot]
closed
3 years ago
1
Bump cryptography from 2.6 to 3.2 in /analysis/memote
#56
dependabot[bot]
opened
3 years ago
0
Fix spelling mistakes
#55
sergarcia
opened
4 years ago
0
Bump nltk from 3.4 to 3.4.5 in /analysis/memote
#54
dependabot[bot]
opened
4 years ago
0
Bump urllib3 from 1.24.1 to 1.24.2 in /analysis/memote
#53
dependabot[bot]
closed
3 years ago
1
Bump pyyaml from 3.13 to 5.1 in /analysis/memote
#52
dependabot[bot]
closed
3 years ago
1
Ensure iCBI contains metadata from iSG
#51
sergarcia
closed
5 years ago
1
correct reaction: s7p phosphofructokinase is made ppi dependent and a…
#50
sergarcia
closed
6 years ago
0
Traning and validation
#49
sergarcia
closed
6 years ago
0
What is the correct stoichiometry of RNF and ECH (HYDA)?
#48
sergarcia
closed
6 years ago
0
Kegg annotation is corrupted for certain reactions
#47
sergarcia
closed
6 years ago
0
Unkown hydrogen source
#46
sergarcia
opened
6 years ago
0
Secretion product configuration
#45
sergarcia
closed
6 years ago
1
Tyrosine or phenylalanine secretion is requried for growth
#44
sergarcia
opened
6 years ago
0
Succinate secretion is requried for growth
#43
sergarcia
closed
6 years ago
1
typos in basic curation deletions
#42
sergarcia
closed
6 years ago
0
Basic model curation
#41
sergarcia
closed
6 years ago
0
Media configuration and supplements that affect growth rate (cysteine and urea)
#40
sergarcia
closed
6 years ago
2
TICs
#39
sergarcia
closed
6 years ago
0
Add annotated metabolic enzymes not present in the model using omics.
#38
sergarcia
closed
6 years ago
0
lumped reactions and reversible/irreversible duplicates
#37
sergarcia
closed
6 years ago
1
Unused metabolites
#36
sergarcia
closed
6 years ago
1
Reactions which cannot be balanced.
#35
sergarcia
closed
6 years ago
1
update id of biomass terms to make all consistent (not final)
#34
sergarcia
closed
6 years ago
0
Reorginize notes
#33
sergarcia
closed
6 years ago
0
missing notes in iSG_2.json
#32
sergarcia
closed
6 years ago
1
BOF: Standarization and generic metabolites
#31
sergarcia
closed
6 years ago
3
Reaction charge and mass balance
#30
sergarcia
closed
6 years ago
1
Duplicated subsystems
#29
sergarcia
closed
6 years ago
0
Basic clean up
#28
sergarcia
closed
6 years ago
1
New ids and metadata
#27
sergarcia
closed
6 years ago
0
Use automated reconstructions for curation
#26
sergarcia
closed
6 years ago
1
Standardize complex metabolite formulas
#25
sergarcia
closed
6 years ago
0
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