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TrinityCTAT / ctat-mutations

Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19
https://github.com/TrinityCTAT/ctat-mutations
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COSMIC pulling CANCER snps in cancer.vcf #10

Closed vrushali-broad closed 5 years ago

vrushali-broad commented 5 years ago
  1. COSMIC uses tag FATHMM=PATHOGENIC instead of FATHMM=CANCER
  2. Updates cancer.vcf