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TrinityCTAT / ctat-mutations

Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19
https://github.com/TrinityCTAT/ctat-mutations
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add multi-mapping and read pass annotations #26

Closed brownmp closed 5 years ago

brianjohnhaas commented 5 years ago

looks great! My only suggestion in the future is to add a sys.exit(0) at the end of the main() method to indicate successful completion. I'll add this later while I'm integrating it into the larger pipeline. thx!