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TrinityCTAT / ctat-mutations

Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19
https://github.com/TrinityCTAT/ctat-mutations
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wiki documentation #4

Closed brianjohnhaas closed 4 years ago

brianjohnhaas commented 6 years ago

let's describe the steps of the workflow on a wiki page, and make reference to the intermediate outputs as well as the final output file.

brianjohnhaas commented 6 years ago

also, we should include the '--update' parameter in the tutorial, with an example of how to specify the location of the various jar files