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TrinityCTAT / ctat-mutations

Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19
https://github.com/TrinityCTAT/ctat-mutations
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overly verbose Checkpointing info logging msgs #88

Closed brianjohnhaas closed 3 years ago

brianjohnhaas commented 3 years ago

Hi,

I'm seeing tons of these info logging messages from the checkpointing system (shown below).

Is there a way to turn them off or set them to a 'debug' rather than an 'info' logging level?

[2021-05-06 08:27:27,34] [info] Checkpoint start
[2021-05-06 08:27:27,34] [info] checkpointClose start
[2021-05-06 08:27:27,34] [info] checkpointClose synched
[2021-05-06 08:27:27,34] [info] checkpointClose script done
[2021-05-06 08:27:27,34] [info] dataFileCache commit start
[2021-05-06 08:27:27,34] [info] dataFileCache commit end
[2021-05-06 08:27:27,36] [info] checkpointClose end
[2021-05-06 08:27:27,36] [info] Checkpoint end - txts: 6340
[2021-05-06 08:27:27,36] [info] Checkpoint start
[2021-05-06 08:27:27,36] [info] checkpointClose start
[2021-05-06 08:27:27,36] [info] checkpointClose synched
[2021-05-06 08:27:27,37] [info] checkpointClose script done
[2021-05-06 08:27:27,37] [info] dataFileCache commit start
[2021-05-06 08:27:27,37] [info] dataFileCache commit end
[2021-05-06 08:27:27,39] [info] checkpointClose end
[2021-05-06 08:27:27,39] [info] Checkpoint end - txts: 6347
[2021-05-06 08:27:27,39] [info] Checkpoint start
[2021-05-06 08:27:27,39] [info] checkpointClose start
[2021-05-06 08:27:27,39] [info] checkpointClose synched
[2021-05-06 08:27:27,39] [info] checkpointClose script done
[2021-05-06 08:27:27,39] [info] dataFileCache commit start
[2021-05-06 08:27:27,39] [info] dataFileCache commit end
[2021-05-06 08:27:27,41] [info] checkpointClose end
[2021-05-06 08:27:27,41] [info] Checkpoint end - txts: 6349
[2021-05-06 08:27:27,41] [info] Checkpoint start
[2021-05-06 08:27:27,41] [info] checkpointClose start
[2021-05-06 08:27:27,41] [info] checkpointClose synched
[2021-05-06 08:27:27,41] [info] checkpointClose script done
[2021-05-06 08:27:27,41] [info] dataFileCache commit start
[2021-05-06 08:27:27,41] [info] dataFileCache commit end
[2021-05-06 08:27:27,42] [info] checkpointClose end
[2021-05-06 08:27:27,42] [info] Checkpoint end - txts: 6351
[2021-05-06 08:27:27,42] [info] Checkpoint start
[2021-05-06 08:27:27,42] [info] checkpointClose start
[2021-05-06 08:27:27,42] [info] checkpointClose synched
...