add multithreading for the variant annotation steps of the workflow

TrinityCTAT / ctat-mutations

Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19

https://github.com/TrinityCTAT/ctat-mutations

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add multithreading for the variant annotation steps of the workflow #90

Closed brianjohnhaas closed 3 years ago

brianjohnhaas commented 3 years ago

updated the wdl to support variant annotation thread count and updated the interface to the annotate_ED.py so that it would use the specified number of threads for pblat