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TrinityCTAT / ctat-mutations

Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19
https://github.com/TrinityCTAT/ctat-mutations
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Terra configuration #92

Open jbeane0428 opened 3 years ago

jbeane0428 commented 3 years ago

Hi, Are there instructions on how to properly configure all the reference files so that the ctat mutations pipeline will run on Terra with FASTQ inputs? Thank you.

joshua-gould commented 3 years ago

The easiest way is to clone our featured workspace. You can see the config for the method at https://app.terra.bio/#workspaces/ctat-firecloud/ctat-mutations/workflows/CTAT/ctat_mutations.