brianjohnhaas
commented
2 years ago hi - the ctat mutations pipeline still needs to be upgraded to use the latest ctat genome lib - should happen later in August.
The latest release and ctat genome lib requirements are posted here: https://github.com/NCIP/ctat-mutations/releases
apologies for the inconvenience. We're aiming to synch things in the not too distant future.
On Wed, Jul 28, 2021 at 11:24 PM Jeongmeani @.***> wrote:
Hi,
after following https://github.com/NCIP/ctat-mutations/wiki/CTAT-mutations-installation, by using docker i run RNA-seq data.
but it occurs error printing
unrecognized parameter name "genomeType" in input "genomeParameters.txt"
when i run star-fusion, this error does not occur.
so what is the point?
my CTAT genome lib is GRCh37_gencode_v19_CTAT_lib_Mar012021.plug-n-play.tar.gz and supplement is GRCh37.mutation_lib_supplement.Jul272020.tar.gz
Best regards
Jeongmin
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Brian J. Haas The Broad Institute http://broadinstitute.org/~bhaas http://broad.mit.edu/~bhaas
Hi,
after following https://github.com/NCIP/ctat-mutations/wiki/CTAT-mutations-installation, by using docker i run RNA-seq data.
but it occurs error printing
when i run star-fusion, this error does not occur.
so what is the point?
my CTAT genome lib is GRCh37_gencode_v19_CTAT_lib_Mar012021.plug-n-play.tar.gz and supplement is GRCh37.mutation_lib_supplement.Jul272020.tar.gz
Best regards
Jeongmin