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Trinotate / Trinotate.github.io

web documentation for Trinotate
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cannot locate report database file #32

Open depac opened 4 years ago

depac commented 4 years ago

Hello Brain,

Why do I get this error? I tried creating my own database as well as downloading from the resources. With both it gives the same error. I thought it to be version incompatibility but should not occur when I am creating my own databse? Please let me know if I am missing something here.

Thanks!

Trinotate Trinotate_v3.sqlite init --gene_trans_map ../trinity_out/Trinity.fasta.gene_trans_map --transcript_fasta ../trinity_out/Trinity.fasta --transdecoder_pep ../Transdecoder/Trinity.fasta.transdecoder.pep Trinotate Trinotate_v3.sqlite LOAD_swissprot_blastp blastp.outfmt6 Trinotate report Trinotate_v3.sqlite -E 0.0001 --pfam_cutoff 'DNC' > annotation_report.xls

Error, cannot locate report database file. Be sure it's in your current directory. at /path/software/Anaconda2/envs/trinotate/bin/Trinotate line 53

brianjohnhaas commented 4 years ago

Hi

Try giving the database name as the first parameter followed by 'report'

Best

-via googleFi

On Thu, Jan 9, 2020, 2:47 AM depac notifications@github.com wrote:

Hello Brain,

Why do I keep getting this error? I tried creating my own database as well as downloading from the resources. With both it gives the same error. I thought it to be version incompatibility but should not occur when I am creating my own databse? Please let me know if I am missing something here.

Thanks!

Trinotate Trinotate_v3.sqlite init --gene_trans_map ../trinity_out/Trinity.fasta.gene_trans_map --transcript_fasta ../trinity_out/Trinity.fasta --transdecoder_pep ../Transdecoder/Trinity.fasta.transdecoder.pep Trinotate Trinotate_v3.sqlite LOAD_swissprot_blastp blastp.outfmt6 Trinotate report Trinotate_v3.sqlite -E 0.0001 --pfam_cutoff 'DNC' > annotation_report.xls

Error, cannot locate report database file. Be sure it's in your current directory. at /path/software/Anaconda2/envs/trinotate/bin/Trinotate line 53

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depac commented 4 years ago

Thanks! I did not catch that mistake from the error!