brianjohnhaas
commented
4 years ago Hi,
The updated url is in the latest release, but it probably didn't make it to bioconda yet. It's easy to download, untar, and run:
https://github.com/Trinotate/Trinotate/releases/tag/Trinotate-v3.2.1
best,
~b
On Wed, May 6, 2020 at 4:21 PM jlastoll notifications@github.com wrote:
I have trinotate installed in a bioconda environment. When I tried to use to use Build_Trinotate_Boilerplate_SQLite_db.pl within the last few days, I am getting an error at the command for downloading the eggnog database. It appear that the url in the perl script differs from the url in the most updated version of this script on github. Could this be updated, or am I doing something else wrong?
This is the error message: "Resolving eggnogdb.embl.de (eggnogdb.embl.de)... 194.94.44.170 Connecting to eggnogdb.embl.de (eggnogdb.embl.de)|194.94.44.170|:80... connected. HTTP request sent, awaiting response... 302 Moved Temporarily Location: http://eggnog5.embl.de/download/latest/data/NOG/NOG.annotations.tsv.gz [following] --2020-05-06 16:06:19-- http://eggnog5.embl.de/download/latest/data/NOG/NOG.annotations.tsv.gz Resolving eggnog5.embl.de (eggnog5.embl.de)... 194.94.44.170 Reusing existing connection to eggnogdb.embl.de:80. HTTP request sent, awaiting response... 404 Not Found 2020-05-06 16:06:19 ERROR 404: Not Found.
Error, cmd: wget " http://eggnogdb.embl.de/download/latest/data/NOG/NOG.annotations.tsv.gz" died with ret 2048 at /home/js69a/.conda/envs/Annotation/lib/site_perl/5.26.2/Pipeliner.pm line 102."
Thanks
— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/Trinotate/Trinotate.github.io/issues/35, or unsubscribe https://github.com/notifications/unsubscribe-auth/ABZRKX3JEEWQ4DWIBMUA4QTRQHBEFANCNFSM4M2X74QA .
--
Brian J. Haas The Broad Institute http://broadinstitute.org/~bhaas http://broad.mit.edu/~bhaas
I have trinotate installed in a bioconda environment. When I tried to use to use Build_Trinotate_Boilerplate_SQLite_db.pl within the last few days, I am getting an error at the command for downloading the eggnog database. It appear that the url in the perl script differs from the url in the most updated version of this script on github. Could this be updated, or am I doing something else wrong?
This is the error message: "Resolving eggnogdb.embl.de (eggnogdb.embl.de)... 194.94.44.170 Connecting to eggnogdb.embl.de (eggnogdb.embl.de)|194.94.44.170|:80... connected. HTTP request sent, awaiting response... 302 Moved Temporarily Location: http://eggnog5.embl.de/download/latest/data/NOG/NOG.annotations.tsv.gz [following] --2020-05-06 16:06:19-- http://eggnog5.embl.de/download/latest/data/NOG/NOG.annotations.tsv.gz Resolving eggnog5.embl.de (eggnog5.embl.de)... 194.94.44.170 Reusing existing connection to eggnogdb.embl.de:80. HTTP request sent, awaiting response... 404 Not Found 2020-05-06 16:06:19 ERROR 404: Not Found.
Error, cmd: wget "http://eggnogdb.embl.de/download/latest/data/NOG/NOG.annotations.tsv.gz" died with ret 2048 at /home/js69a/.conda/envs/Annotation/lib/site_perl/5.26.2/Pipeliner.pm line 102."
Thanks