NOG database is not available - link is dead

[jgrzadziel]

Command:

$TRINOTATE_HOME/admin/Build_Trinotate_Boilerplate_SQLite_db.pl Trinotate Error:

Error, cmd: wget "http://eggnogdb.embl.de/download/latest/data/NOG/NOG.annotations.tsv.gz" died with ret 2048 at /home/jgrzadziel/miniconda3/lib/site_perl/5.26.2/Pipeliner.pm line 102. Pipeliner::run(Pipeliner=HASH(0x55acc5319c58)) called at /home/jgrzadziel/miniconda3/bin/Build_Trinotate_Boilerplate_SQLite_db.pl line 120

[brianjohnhaas]

hi,

The very latest release has the updated url. You'll have to get it from our release site, as bioconda isn't updated yet.

https://github.com/Trinotate/Trinotate/releases/tag/Trinotate-v3.2.1

best,

~b

On Thu, May 21, 2020 at 3:19 AM jgrzadziel notifications@github.com wrote:

Command:

$TRINOTATE_HOME/admin/Build_Trinotate_Boilerplate_SQLite_db.pl Trinotate Error:

Error, cmd: wget " http://eggnogdb.embl.de/download/latest/data/NOG/NOG.annotations.tsv.gz" died with ret 2048 at /home/jgrzadziel/miniconda3/lib/site_perl/5.26.2/Pipeliner.pm line 102. Pipeliner::run(Pipeliner=HASH(0x55acc5319c58)) called at /home/jgrzadziel/miniconda3/bin/Build_Trinotate_Boilerplate_SQLite_db.pl line 120

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--

Brian J. Haas The Broad Institute http://broadinstitute.org/~bhaas http://broad.mit.edu/~bhaas

[jgrzadziel]

@brianjohnhaas Thanks a lot ! Indeed I have used bioconda, that's why there was a problem :)