I am testing my Trinotate for trail,
But it got error,
Even Though i copy the my.sqlite file to auto folder, it did not work,
Could you please look into that, i have attached the whole run command in txt file,
Running CMD: /home/pmslab/Desktop/SIVA/Trinotate/auto/..//Trinotate my.sqlite init --gene_trans_map myTrinity.fasta.gene_to_trans_map --transcript_fasta myTrinity.fasta --transdecoder_pep myTrinity.fasta.transdecoder.pep
Error, cannot locate my.sqlite database file. Be sure it's in your current directory. at /home/pmslab/Desktop/SIVA/Trinotate/auto/..//Trinotate line 53.
Error, cmd: /home/pmslab/Desktop/SIVA/Trinotate/auto/..//Trinotate my.sqlite init --gene_trans_map myTrinity.fasta.gene_to_trans_map --transcript_fasta myTrini
testing_run.sh.docx
ty.fasta --transdecoder_pep myTrinity.fasta.transdecoder.pep 2>tmp.1735.stderr died with ret 65280 at /home/pmslab/Desktop/SIVA/Trinotate/auto/../PerlLib/Pipeliner.pm line 102.
Pipeliner::run(Pipeliner=HASH(0x563466582f20)) called at ../autoTrinotate.pl line 109
I am testing my Trinotate for trail, But it got error, Even Though i copy the my.sqlite file to auto folder, it did not work,
Could you please look into that, i have attached the whole run command in txt file,
Thanking You testing_run.sh.docx