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Trinotate / Trinotate.github.io

web documentation for Trinotate
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Error, cmd: /Trinotate line 126. #51

Open zhang144999 opened 3 years ago

zhang144999 commented 3 years ago

Dear developer I trying to use the Trinotate load my custom blast.

$/home/wj/ZGP/Trinotate/Trinotate-Trinotate-v3.2.1/Trinotate Trinity.Trinotate.sqlite LOAD_custom_blast --outfmt6 Repbase_blastx.outfmt6 --dbtype Repbase --prog blastx

CMD:` /home/wj/ZGP/Trinotate/Trinotate-Trinotate-v3.2.1/util/trinotateSeqLoader/Trinotate_BLAST_loader.pl --sqlite Trinity.Trinotate.sqlite --outfmt6 Repbase_blastx.outfmt6 --dbtype Repbase --prog blastx

CMD:`` echo "pragma journal_mode=memory; pragma synchronous=0; pragmacache_size=4000000; .mode tabs .import tmp.blast_bulk_load.54300 BlastDbase" | sqlite3 Trinity.Trinotate.sqlite memory Error: tmp.blast_bulk_load.54300 line 1: expected 13 columns of data but found 12 Error, cmd: echo "pragma journal_mode=memory; pragma synchronous=0; pragma cache_size=4000000; .mode tabs .import tmp.blast_bulk_load.54300 BlastDbase" | sqlite3 Trinity.Trinotate.sqlite died with ret 256 at /home/wj/ZGP/Trinotate/Trinotate-Trinotate-v3.2.1/util/trinotateSeqLoader/../../PerlLib/Sqlite_connect.pm line 190, <$fh> line 2174303. Sqlite_connect::bulk_load_sqlite('Trinity.Trinotate.sqlite', 'BlastDbase', 'tmp.blast_bulk_load.54300') called at /home/wj/ZGP/Trinotate/Trinotate-Trinotate-v3.2.1/util/trinotateSeqLoader/Trinotate_BLAST_loader.pl line 160

Error, cmd: /home/wj/ZGP/Trinotate/Trinotate-Trinotate-v3.2.1/util/trinotateSeqLoader/Trinotate_BLAST_loader.pl --sqlite Trinity.Trinotate.sqlite --outfmt6 Repbase_blastx.outfmt6 --dbtype Repbase --prog blastx died with ret 256 at /home/wj/ZGP/Trinotate/Trinotate-Trinotate-v3.2.1/Trinotate line 126.

I don't know how to deal with this problem. Thank you so much!!

Zhang