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Trinotate / Trinotate.github.io

web documentation for Trinotate
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Question about Build_Trinotate_Boilerplate_SQLite_db.pl #54

Open Genan-blur opened 3 years ago

Genan-blur commented 3 years ago

Hi Brian:

I have a problem with the command "Build_Trinotate_Boilerplate_SQLite_db.pl", and I was stuck in this process(--2021-03-22 11:38:03-- ftp://ftp.geneontology.org/pub/go/external2go/pfam2go (try:20) => 'pfam2go'Connecting to ftp.geneontology.org|171.67.205.83|:21... failed: Connection timed out.Giving up.). I can run this command a month ago, but it failed now. Please help.

Thanks a lot!

brianjohnhaas commented 3 years ago

hi,

I'm hoping they're going to restore their ftp site soon. In the meantime, you can replace the url with this one: https://data.broadinstitute.org/Trinity/Trinotate_v3_RESOURCES/Trinotate_v3_RESOURCES/pfam2go

best,

~b

On Mon, Mar 22, 2021 at 2:31 AM Genan @.***> wrote:

Hi Brian:

I have a problem with the command "Build_Trinotate_Boilerplate_SQLite_db.pl", and I was stuck in this process(--2021-03-22 11:38:03-- ftp://ftp.geneontology.org/pub/go/external2go/pfam2go (try:20) => 'pfam2go'Connecting to ftp.geneontology.org|171.67.205.83|:21... failed: Connection timed out.Giving up.). I can run this command a month ago, but it failed now. Please help.

Thanks a lot!

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Genan-blur commented 3 years ago

it works~ Thanks a lot!

abretaud commented 3 years ago

Hi! It seems like the ftp site is gone for good: https://twitter.com/news4go/status/1367999547574603778

brianjohnhaas commented 3 years ago

thx. I'll aim to get a patch release out to handle this soon.

On Wed, Mar 24, 2021 at 9:59 AM Anthony Bretaudeau @.***> wrote:

Hi! It seems like the ftp site is gone for good: https://twitter.com/news4go/status/1367999547574603778

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Brian J. Haas The Broad Institute http://broadinstitute.org/~bhaas http://broad.mit.edu/~bhaas