use trinotate without signalP and TMHMM ouput files

[nargisbashir]

Hi all, i am totally new to bioinformatics and i am trying to annotate my transcriptome of non model plat. i came across trinotate tool in which different databases outputs are loaded. i was just wondering if we can use only the annotation output generated from searching Swiss-Prot and Pfam databases and leave signalP and TMHMM? hope i am clear.

thanks

[aguang]

I am not the author but, yes you can do that. If you don't have signalp and tmhmm it just won't run them.