Some commands and options are not available in the API

[tjayrush]

They should be removed from the API docs

• ~chifra chunks index --tag~
• ~chifra chunks <mode> --truncate~
• ~chifra chunks pins~
• ~chifra chunks --pin~
• ~chifra chunks --publish~
• ~chifra chunks --remote~
• ~chifra chunks --truncate~
• ~chifra daemon~
• ~chifra explore~
• ~chifra monitors --watch~
• ~chifra scrape~
• ~the global --file and --output options~