I'm bringing up here too an issue coming from the Martini forum:
I am surprised to see that although there is a random kick option backward.py -kick, it appears to be nullified on line 190 of backward.py:
if False and res not in solvent_stuff:
that will always fail and therefore disallow the random kicks on the next line:
x,y,z = kick(x,size),kick(y,size),kick(z,size)
Does anybody know why random kicks have been disallowed? It may also be useful to remove the command line option entirely vs. this particular method of avoiding wholesale random kicks.
I'm bringing up here too an issue coming from the Martini forum: