INSert membrANE - A simple, versatile tool for building coarse-grained simulation systems
GNU General Public License v2.0
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How to make a hole at the center of the membrane instead of the origin (0,0)? #85
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John-zzh opened 2 months ago
Hi Tsjerk,
I'm using insane script recently to build transmembrane protein systems. when I did this: insane \ -o CG_full_dimer_SOL_ions.gro -p topol.top \ -hole 8 -ring \ -d 0 -pbc rectangular -x 35 -y 35 -z 15 \ -sol W -salt 0.15 \ -f CG_full_dimer.pdb \ -l DOPC:8 -l DOPE:1 -l DOPS:1 \ -dm 0.5
it just dig a hole across teh pbc, directly at the (0,0) of the XY plane. Is there anyway to dig a hole at the center of the membrane?![image](https://github.com/Tsjerk/Insane/assets/55937675/e24474f6-f4e8-4568-afca-de263f74f2cd)