pip-compile(deps): bump snakemake from 7.20.0 to 7.22.0

[dependabot[bot]]

Bumps snakemake from 7.20.0 to 7.22.0.

Release notes

Sourced from snakemake's releases.

v7.22.0

7.22.0 (2023-02-12)

Features

• add cleanup containers option (#2088) (053e3b3)

Bug Fixes

• assume shared filesystem by default when running with --flux (#2075) (4bec2fd)
• properly handle NA values for paramspaces (#2098) (6b6a880)

v7.21.0

7.21.0 (2023-01-30)

Features

• ability to encode paramspaces into a single wildcard, via the newly introduced single_wildcard argument of Paramspace. (#2069) (728ab3c)
• allow input, output, and params to be used in functions passed to report mark arguments (#2081) (93ff8b6)

Bug Fixes

• more robust encoding of params in persistent metadata storage. This way, pandas parameters do not lead to spurious rerun triggers. (#2080) (106a4c3)
• more robust parsing of sacct output in slurm executor (#2036) (fe651f8)
• Postprocess job groups in toposorted order for correct touch times (#2073) (10b5849)

Changelog

Sourced from snakemake's changelog.

7.22.0 (2023-02-12)

Features

• add cleanup containers option (#2088) (053e3b3)

Bug Fixes

• assume shared filesystem by default when running with --flux (#2075) (4bec2fd)
• properly handle NA values for paramspaces (#2098) (6b6a880)

7.21.0 (2023-01-30)

Features

• ability to encode paramspaces into a single wildcard, via the newly introduced single_wildcard argument of Paramspace. (#2069) (728ab3c)
• allow input, output, and params to be used in functions passed to report mark arguments (#2081) (93ff8b6)

Bug Fixes

• more robust encoding of params in persistent metadata storage. This way, pandas parameters do not lead to spurious rerun triggers. (#2080) (106a4c3)
• more robust parsing of sacct output in slurm executor (#2036) (fe651f8)
• Postprocess job groups in toposorted order for correct touch times (#2073) (10b5849)

Commits

• 2a4b9b6 chore(main): release 7.22.0 (#2107)
• 053e3b3 feat: add cleanup containers option (#2088)
• 6b6a880 fix: properly handle NA values for paramspaces (#2098)
• 4bec2fd fix: assume shared filesystem by default when running with --flux (#2075)
• 512e49b chore: testcase for parallel group job execution with slurm executor (#2092)
• 8f79f22 chore(main): release 7.21.0 (#2074)
• 93ff8b6 feat: allow input, output, and params to be used in functions passed to repo...
• 106a4c3 fix: more robust encoding of params in persistent metadata storage. This way,...
• ac83023 chore(deps): Bump amannn/action-semantic-pull-request from 4.6.0 to 5.0.2 (#1...
• fe651f8 fix: more robust parsing of sacct output in slurm executor (#2036)
• Additional commits viewable in compare view

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[dependabot[bot]]

Superseded by #119.