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Tuks-ICMM / Pharmacogenetic-Analysis-Pipeline

A Snakemake powered pipeline developed to perform variant-effect-prediction and frequency analysis given multiple Variant Call Format datasets. This has been developed in partial fulfilment of a MSc in Bioinformatics at the University of Pretoria by Graeme Ford.
https://tuks-icmm.github.io/Pharmacogenetic-Analysis-Pipeline/
Creative Commons Attribution 4.0 International
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pip-compile(deps): bump snakemake from 7.20.0 to 7.25.3 #133

Closed dependabot[bot] closed 1 year ago

dependabot[bot] commented 1 year ago

Bumps snakemake from 7.20.0 to 7.25.3.

Release notes

Sourced from snakemake's releases.

v7.25.3

7.25.3 (2023-05-03)

Bug Fixes

  • fix missed wildcard constraints when using local rule inheritance (#2242) (8e94785)

v7.25.2

7.25.2 (2023-04-28)

Bug Fixes

  • Fix inconsistencies between detailed summary and normal summary (#2218) (d903123)
  • Fix race condition when creating lock directory (#2225) (66ea4d1)
  • quote paths given to singularity in order to ensure that it does not fail when paths contain whitespace (#2190) (a572fb7)

Documentation

  • added changelog info for >v7.19.1 parsing error of "hh:mm:ss" time format in runtime resource (#2189) (2889f38)
  • update misc/vim/Readme with info for packer.nvim (#2095) (32166a7)
  • Update workflow syntax with priority directive (#2188) (af10db5)

v7.25.1

7.25.1 (2023-04-28)

Bug Fixes

  • allow log directive in default target rule (#2191) (86e9624)
  • only consider global wildcard_constraints from the same module (#2235) (c412b71)
  • Use job.rule.name attribute to fill rule field in summary (#2217) (837c3fd)

Documentation

v7.25.0

7.25.0 (2023-03-23)

Features

... (truncated)

Changelog

Sourced from snakemake's changelog.

7.25.3 (2023-05-03)

Bug Fixes

  • fix missed wildcard constraints when using local rule inheritance (#2242) (8e94785)

7.25.2 (2023-04-28)

Bug Fixes

  • Fix inconsistencies between detailed summary and normal summary (#2218) (d903123)
  • Fix race condition when creating lock directory (#2225) (66ea4d1)
  • quote paths given to singularity in order to ensure that it does not fail when paths contain whitespace (#2190) (a572fb7)

Documentation

  • added changelog info for >v7.19.1 parsing error of "hh:mm:ss" time format in runtime resource (#2189) (2889f38)
  • update misc/vim/Readme with info for packer.nvim (#2095) (32166a7)
  • Update workflow syntax with priority directive (#2188) (af10db5)

7.25.1 (2023-04-28)

Bug Fixes

  • allow log directive in default target rule (#2191) (86e9624)
  • only consider global wildcard_constraints from the same module (#2235) (c412b71)
  • Use job.rule.name attribute to fill rule field in summary (#2217) (837c3fd)

Documentation

7.25.0 (2023-03-23)

Features

Bug Fixes

  • always make sure that the original path of source cached files is properly passed into metadata persistence records (#2179) (8bacbd0)

... (truncated)

Commits
  • e3e0b8c chore(main): release 7.25.3 (#2243)
  • 8e94785 fix: fix missed wildcard constraints when using local rule inheritance (#2242)
  • c7ae161 chore(main): release 7.25.2 (#2237)
  • 32166a7 docs: update misc/vim/Readme with info for packer.nvim (#2095)
  • af10db5 docs: Update workflow syntax with priority directive (#2188)
  • 2889f38 docs: added changelog info for >v7.19.1 parsing error of "hh:mm:ss" time form...
  • a572fb7 fix: quote paths given to singularity in order to ensure that it does not fai...
  • d903123 fix: Fix inconsistencies between detailed summary and normal summary (#2218)
  • 66ea4d1 fix: Fix race condition when creating lock directory (#2225)
  • da246d2 chore(main): release 7.25.1 (#2226)
  • Additional commits viewable in compare view


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dependabot[bot] commented 1 year ago

OK, I won't notify you again about this release, but will get in touch when a new version is available. If you'd rather skip all updates until the next major or minor version, let me know by commenting @dependabot ignore this major version or @dependabot ignore this minor version. You can also ignore all major, minor, or patch releases for a dependency by adding an ignore condition with the desired update_types to your config file.

If you change your mind, just re-open this PR and I'll resolve any conflicts on it.