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TuragaLab / DECODE

This is the official implementation of our publication "Deep learning enables fast and dense single-molecule localization with high accuracy" (Nature Methods)
GNU General Public License v3.0
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Fresh install of DECODE 0.10.2 #218

Closed cleterrier closed 1 year ago

cleterrier commented 1 year ago

Hi @Haydnspass et al,

I'm trying to update DECODE to its latest available version (0.10.2 according to the releases).

I cloned my production environment, then used the instructions at https://decode.readthedocs.io/en/release-0.10/installation.html tu update the clone using:

conda update -n decode_env -c turagalab -c pytorch -c conda-forge decode

But it just updates a couple of accessory packages, and leaves DECODE untouched. Reported version with conda list is still 0.10.0.

Do you know how I can make a complete update of DECODE? Or would it be better to create a fresh environment and install the latest version in it? If so, what are the updated instructions? For example, should I still use cudatoolkit 11.3?

Haydnspass commented 1 year ago

Hmm, could you try

conda install -c turagalab -c pytorch -c conda-forge decode=0.10.2

But I recall that you installed DECODE from source and not as a conda package, no?