search

TurakhiaLab / ROADIES

Tool for fully-automated inference of species trees from raw genome assemblies
https://turakhia.ucsd.edu/ROADIES/
MIT License
19 stars 2 forks source link

GLIBC #32

Open Mvwestbury opened 2 days ago

Mvwestbury commented 2 days ago

Hi

This looks like a super nice tool and I am excited to try and use it. However, I was wondering if there was any way around the need for the GLIBC v2.29? I had our admin install the software and when I use -h it works. However, we trying to run the test data I run into the problem workflow/scripts/lastz_32: /lib64/libm.so.6: version `GLIBC_2.29' not found (required by workflow/scripts/lastz_32)

We are using Redhat so are bound to 2.28 apparently...

Thanks

ang037 commented 1 day ago

Hi,

Thanks for pointing it out. We are working on removing this requirement so that RedHat users can also try the conda installation method.

Meanwhile, you can also install and use ROADIES through docker.

Pull and run the docker image using the command below:

docker pull ang037/roadies:latest
docker run -it ang037/roadies:latest

When the docker is ready to use, make sure that roadies_env environment is activated. If it's not activated, run the following command (otherwise, skip it and directly download the test dataset and proceed with pipeline execution). 

source roadies_env.sh

The steps are mentioned in the README.md. Let me know if you have any questions.